OWL-Simple This package contains a set of modules to parse an OWL ontology into a hash. SCRIPTS The similarity_match.pl compares a list of annotations to another ontology and suggests the best match based on some similarity metric (Levenshtein distance). It is also possible to align one ontology to another. Accepts ontologies in both OBO and OWL formats as well as MeSH ASCII. INSTALLATION Use: perl Build.PL ./Build ./Build test ./Build install DEPENDENCIES IO::File IO::Handle GO::Parser Getopt::Long Moose Log::Log4perl Text::LevenshteinXS XML::Parser Benchmark DOCUMENTATION After installing, you can find documentation modules and scripts with the perldoc command, e.g.: perldoc OWL::Simple::Parser perldoc similarity_match.pl KNOWN ISSUES Scripts were tested on UNIX. Correct loading of OWL ontologies can only be guaranteed if they were produced in Protege3. COPYRIGHT AND LICENSE Copyright (c) 2010 European Bioinformatics Institute. All Rights Reserved. This module is free software; you can redistribute it and/or modify it under GPLv3. This software is provided "as is" without warranty of any kind.